殷明波

复旦大学生命科学学院 教授

Email: yinm@fudan.edu.cn

• 教育背景

2009-2011 博士  德国慕尼黑大学

• 工作经历

2022.12 –        教授     复旦大学

2014.12 – 2022.11 副研究员 复旦大学

2012.01 – 2014.11 讲师     复旦大学

• 研究方向

聚焦浮游动物系统分类和进化，研究浮游动物分类、多样性形成与维持机制及其适应性进化的分子基础，揭示其对维系水生生态系统健康的关键作用。欢迎有兴趣的本科生（科创）和研究生加入我们。

• 教学

2014 –   湿地生态学

2014 –   动物学

2021 –   普通生物学

• 学术服务

2019 – 2023  Limnology (SCI) 副主编

2023 –      BMC Ecology and Evolution (SCI) 编委

• 基金（主持）

01.2023 -12.2026, 国家自然基金委面上项目 (32271690)

01.2020 -12.2023, 国家自然基金委面上项目 (31971396)

01.2017 -12.2020, 国家自然基金委面上项目 (31670380)

07.2016 -06.2019, 上海市科委面上项目 (16ZR1402900)

01.2013 -12.2015, 国家自然基金委青年项目 (31200284)

• 发表文章（^*为通讯作者）

①近五年代表作

1. Deng Z, Zhang X, Wolinska J, Blair D, Hu W and Yin M^*. Climate has contributed to population diversification of Daphnia galeata across Eurasia. Molecular Ecology, 2023, 92:1743-1758.

2. Zhang X, Wolinska J, Blair D, Hu W and Yin M^*. Responses to predation pressure involve similar sets of genes in two divergent species of Daphnia. Journal of Animal Ecology, 2023, 32:5110-5124.

3. Wang L, Deng Z, Blair D, Hu W and Yin M^*. Phylogeography and genetic diversity of the Scapholeberis kingii species complex (Cladocera: Daphniidae) in China. Molecular Phylogenetics and Evolution, 2023, 181:107725.

4. Deng Z, Yao Y, Blair D, Hu W and Yin M^*. Ceriodaphnia (Cladocera: Daphniidae) in China: lineage diversity, phylogeography and possible interspecific hybridization. Molecular Phylogenetics and Evolution, 2022, 175:107586.

5. Deng Z, Yang W, Blair D, Hu W and Yin M^*. Diversity of Brachionus plicatilis species complex (Rotifera) in inland saline waters from China: presence of a new mitochondrial clade on the Tibetan Plateau. Molecular Phylogenetics and Evolution, 2022, 171:107457.

6. Ma X, Deng Z, Blair D, Bi Y, Hu W and Yin M^*. Cyanobacterial bloom associated with a complete turnover of a Daphnia population in a warm‐temperate eutrophic lake in Eastern China. Freshwater Biology, 2022, 67:508-517.

7. Zhang X, Blair D, Wolinska J, Ma X, Yang W, Hu W and Yin M^*. Genomic regions associated with adaptation to predation in Daphnia often include members of expanded gene families. Proceedings of the Royal Society B: Biological Sciences, 2021, 20210803.

8. Wang J, Ni Y, Hu W and Yin M^*. Lineage diversity and gene introgression in freshwater cladoceran crustaceans of the Chydorus sphaericus species complex. Limnology and Oceanography, 2021, 66:95-107.

9. Ma X, Ni Y, Wang X, Hu W and Yin M^*. Clonal diversity and substantial genetic divergence of the Daphnia similis species complex in Chinese lakes: possible adaptations to the uplift of the Qinghai-Tibetan Plateau. Limnology and Oceanography, 2019, 64:2725-2737.

10. Ni Y, Ma X, Hu W, Blair D and Yin M^*. New lineages and old species: lineage diversity and regional distribution of Moina (Crustacea: Cladocera) in China. Molecular Phylogenetics and Evolution, 2019, 134:87-98.

11. Ma X, Hu W, Smilauer P, Yin M^* and J Wolinska. Daphnia galeata and D. dentifera are geographically and ecologically separated whereas their hybrids occur in intermediate habits: survey of 44 Chinese lakes. Molecular Ecology, 2019, 28:785-802.

12. Ma X, Petrusek A, Wolinska J, Hu W and Yin M^*. Lineage diversity and reproductive modes of the Daphnia pulex group in Chinese lakes and reserviors. Molecular Phylogenetics and Evolution, 2019, 130:424-433.

②其它第一/通讯作者论文

13. Pei Y, Deng Z, Zhang X, Blair D, Hu W and Yin M^*. Chromosome-scale genome assembly of the freshwater cladoceran crustacean Chydorus sphaericus: a resource for discovery of genes responsive to ecological challenges. Aquatic Toxicology, 2023, 106565.

14. Yang W, Deng Z, Blair D, Hu W and Yin M^*. Phylogeography of the freshwater rotifer Brachionus calyciflorus species complex in China. Hydrobiologia, 2022, 849:2813-2829.

15. Deng Z, Ni Y, Wang J, Ebido, C, Elijah C, Joseph O, Blair D, Hu W and Yin M^*. Cryptic diversity and gene introgression of Moinidae (Crustacea: Cladocera) in Nigeria. Contributions to Zoology, 2021, 90:463-486.

16. Deng Z, Chen Y, Ma X, Hu W and Yin M^*. Dancing on the top: phylogeography and genetic diversity of freshwater fairy shrimps (Branchiopoda, Anostraca) on the Tibetan Plateau of China.Hydrobiologia, 2021, 848:2611-2626.

17. Ma X, Ni Y, Wang X, Hu W and Yin M^*. Lineage diversity, morphological and genetic divergence in Daphnia magna (Crustacea) among Chinese lakes at different altitudes. Contributions to Zoology, 2020, 89:450-470.

18. Ni Y; Ebido C; Odii E; Wang J; Orakwelu C; Abonyi F; Ngene C; Okoro J; Ubachukwu P; Hu W and Yin M^*. Phylogeography and genetic diversity of the copepod family Cyclopidae (Crustacea: Cyclopoida) from freshwater ecosystems of Southeast Nigeria. BMC Evolutionary Biology, 2020, 20:45.

19. Luo F^#, Yin M^#, Mo X^#, et al., and Hu W. An improved genome assembly of the fluke Schistosoma japonicum. PLOS Neglected Tropical Diseases, 2019, 13:e0007621.

20. Yin M^*, Wang X, Ma X, Giessler S, Petrusek A, Griebel J, Hu W and Wolinska J. Cytonuclear diversity and shared mitochondrial haplotypes among Daphnia galeata populations separated by seven thousand kilometres. BMC Evolutionary Biology, 2018, 12:130.

21. Wang X, Ma X, Hu W and Yin M^*. Genetic diversity and population differentiation of the freshwater copepod Sinocalanus tenellus (Calanoida, Centropagidae) in China. Journal of Limnology, 2018, 77:300-307.

22. Zhou X, Tambo E, Su J, Fang Q, Ruan W, Chen J^*, Yin M^* and Zhou XN^*. Genetic diversity and natural selection in 42 kDa region of Plasmodium vivax merozoite surface protein-1 from China-Myanmar endemic border. The Korean Journal of parasitology, 2017, 55:473-480.

23. Li Y, Yin M^*, Wu Q, McManus D, Blair D, Li H, Xu B, Mo X, Feng Z and W Hu^*. Genetic diversity and selection of three nuclear genes in Schistosoma japonicum populations. Parasites & Vectors, 2017, 10:287.

24. Ma X, Wolinska J, Petrusek A, Gießler S, Hu W and Yin M^*. The phenotypic plasticity in Chinese populations of Daphnia similoides sinensis: recurvate helmeted forms are associated with the presence of predators. Journal of Plankton Research, 2016, 38:855-864.

25. Yin M^#, Liu X^#, Huang J, Zheng Q, Yang Z, Feng Z, Hang Z and W Hu. Genetic variation between Schistosoma japonicum lineages from lake and mountainous regions in China revealed by resequencing whole genomes. Acta Tropica, 2016, 161:79-85.

26. Yin M, Li H, Blair D, Xu B, Feng Z and W Hu. Temporal genetic diversity of Schistosoma japonicum in two endemic sites in China revealed by microsatellite markers. Parasites & Vectors, 2016, 9:36.

27. Yin M^#, Zheng H^#, Su J, Feng Z, McManus DP, Zhou X, Jin L and W Hu. Co-dispersal of the blood fluke Schistosoma japonicum and Homo sapiens in the Neolithic Age. Scientific Reports, 2015, 5:18058.

28. Wei W, Gießler S, Wolinska J, Ma X, Yang Z, Hu W and Yin M^*. Genetic structure of Daphnia galeata populations in Eastern China. PloS ONE, 2015, 10.

29. Yin M^#, Li H^#, McManus DP, Blair D, Su J, Yang Z, Xu B, Feng Z and W Hu. Geographical genetic structureof Schistosoma japonicum revealed by analysis of mitochondrial DNA and microsatellite markers. Parasites & Vectors, 2015, 8 (1), 150.

30. Ezeh C^#, Yin M^#, Li H, Zhang T, Xu B, Sacko M, Feng Z and Hu W. High Genetic Variability of Schistosoma haematobium in Mali and Nigeria. The Korean Journal of Parasitology, 2015, 53:129.

31. Ma X, Petrusek A, Wolinska J, Gießler S, Zhong Y, Yang Z, Hu W and Yin M^*. Diversity of the Daphnia longispina species complex in Chinese lakes: a DNA taxonomy approach. Journal of Plankton Research, 2015, 1:56-65.

32. Wang Y, Ma A, Chen S, Yang Y, Chen J^* and Yin M^*. Genetic diversity and natural selection of three blood-stage 6-Cys proteins in Plasmodium vivax populations from the China-Myanmar endemic border. Infection, Genetics and Evolution, 2014, 28:167-174.

33. Yin M, Gießler S, Griebel J and Wolinska J. Hybridizing Daphnia communities from ten neighbouring lakes: spatio-temporal dynamics, local processes, gene flow and invasiveness. BMC Evolutionary Biology, 2014, 14:80.

34. Yin M^*, Petrusek A, Seda J and Wolinska J. Fine-scale genetic analysis of Daphnia host populations infected by two virulent parasites -strong fluctuations in clonal structure at small temporal and spatial scales. International Journal for Parasitology, 2012, 45: 115-121. (cover story)

35. Yin M^*, Petrusek A, Seda J and Wolinska J. Fine-scale temporal and spatial variation of taxon and clonal structure in the Daphnia longispina hybrid complex in heterogeneous environments. BMC Evolutionary Biology, 2012, 12:12.

36. Yin M, Laforsch C, Lohr J, Wolinska J. Predator-induced defence makes Daphnia more vulnerable to parasites.Evolution, 2011, 65:1482-1488. (cited by Faculty 1000: Exceptional)

37. Yin M^*, Wolinska J and Gießler S. Clonal diversity, clonal persistence and rapid taxon replacement in natural populations of species and hybrids of the Daphnia longispina complex. Molecular Ecology, 2010, 19:4168-4178.

38. Yin M, Hu W, Mo XJ, Wang S, Brindley PJ, McManus DP, Davis GM, Feng Z and Blair D. Multiple near-identical genotypes of Schistosoma japonicum can occur in snails and have implications for population-genetic analyses. International Journal for Parasitology, 2008, 38:1681-1691.

③合作论文

39. Luo F, Yang W, Yin M, et al, and Hu W. A chromosome-level genome of the human blood fluke Schistosoma japonicum identifies the genomic basis of host-switching. Cell Reports, 2022, 39:110638.

40. Griebel J, Gießler S, Poxleitner M, Navas FA, Yin M and J Wolinska. Extreme environments facilitate hybrid superiority-the story of a successful Daphnia galeata × longispina hybrid clone. PloS ONE, 2015, 10.

41. Griebel J, Gießler S, Yin M and J Wolinska. Parental and hybrid Daphnia from the D. longispina complex: long-term dynamics in genetic structure and significance of overwintering modes. Journal of Evolutionary Biology, 2016, 29:810-823.

42. Wolinska J, Petrusek A, Yin M, Koerner H, Seda J and Giessler S. Population structure of a microparasite infecting Daphnia: spatio-temporal dynamics. BMC Evolutionary Biology, 2014, 1:247.

43. Lohr J, Yin M and Wolinska J. Prior residency does not always pay off-co-infections in Daphnia. Parasitology, 2010, 137, 1493-1500.